A-Cluster
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Linux cluster with currently 13 compute nodes (CPUs: 416 cores, GPUs: 8x RTX 2080 + 18x RTX 3090), purchased by Ana Vila Verde and Christopher Stein
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External address is 134.91.59.31 (will change soon and then get a hostname), internal hostname is stor2.
Queueing system: Slurm
sinfodisplays the cluster's total load.squeueshows running jobs.- Currently, there's just one partiton: "a-cluster"
- In the most simple cases, jobs are submitted via
sbatch -nn script-name. srunis intended for interactive jobs (stdin+stdout+stderr stay attached to the terminal) and its-ndoesn't only reserve n cores but starts n jobs. (Those shouldn't containmpirun, otherwise you'd end up with n² busy cores.)- The assignment of cores can be non-trivial (cf. also task affinity), some rules:
- gromacs: Don't use its
-pinoptions.
- gromacs: Don't use its
Intel Compiler & Co.
- is located in
/opt/intel/oneapi - must be made available via
module use /opt/intel/oneapi/modulefiles(unless you include/opt/intel/oneapi/modulefilesin yourMODULEPATH), thenmodule availlists the available modules.