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K (→Pitfalls: path libcilkrts) |
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| (3 dazwischenliegende Versionen desselben Benutzers werden nicht angezeigt) | |||
| Zeile 17: | Zeile 17: | ||
* <code>module avail</code> lists the installed modules, relevant are: | * <code>module avail</code> lists the installed modules, relevant are: | ||
** compiler/latest → <code> | ** compiler/latest → <code>icx</code>, <code>icpx</code>, <code>ifx</code>, ... (the [https://www.intel.com/content/www/us/en/developer/articles/guide/porting-guide-for-icc-users-to-dpcpp-or-icx.html new Intel compilers]) | ||
** mpi/latest → <code>mpirun</code>, <code> | ** icc/latest → <code>icc</code>, <code>icpc</code> (the [https://community.intel.com/t5/Intel-oneAPI-DPC-C-Compiler/DEPRECATION-NOTICE-Intel-C-Compiler-Classic/m-p/1506693 deprecated C/C++ compilers]) | ||
** ifort/latest → <code>ifort</code> (the [https://community.intel.com/t5/Blogs/Tech-Innovation/Tools/A-Historic-Moment-for-The-Intel-Fortran-Compiler-Classic-ifort/post/1614625 deprecated Fortran compiler]) | |||
** mpi/latest → <code>mpirun</code>, <code>mpiicx</code>, <code>mpiicpx</code>, <code>mpiifx</code>, <code>mpiicc</code>, <code>mpiicpc</code>, <code>mpiifort</code>, ... (Attention: The <code>mpii</code>*s are only wrappers; the actual compiler module needs to be loaded, too.) | |||
** mkl/latest | ** mkl/latest | ||
* <code>module load</code> ... loads a module. | * <code>module load</code> ... loads a module. | ||
Inside a shell script (bash), you have to do <code>shopt -s expand_aliases</code> | Inside a shell script (bash), you have to do <code>shopt -s expand_aliases</code> in order to be able to use the <code>module</code> command. | ||
== Pitfalls == | == Pitfalls == | ||
* The <code>module</code> system fails to reach some Intel libraries (like libcilkrts.so.5<sup>*</sup>). If needed, their path has to be found out and appended:<br><code>export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/oneapi/</code>... | |||
* <code>ifort</code>/<code>mpiifort</code>: When compiling with <code>-i8</code>, you also have to link with <code>-i8</code> (cf. also [https://www.intel.com/content/www/us/en/develop/documentation/mpi-developer-reference-linux/top/command-reference/compiler-commands/compilation-command-options.html manual]). | * <code>ifort</code>/<code>mpiifort</code>: When compiling with <code>-i8</code>, you also have to link with <code>-i8</code> (cf. also [https://www.intel.com/content/www/us/en/develop/documentation/mpi-developer-reference-linux/top/command-reference/compiler-commands/compilation-command-options.html manual]). | ||
<sup>*</sup>: currently in /opt/intel/oneapi/compiler/2023.2.4/linux/bin/intel64 | |||
= [https://www.open-mpi.org/doc/current OpenMPI] = | = [https://www.open-mpi.org/doc/current OpenMPI] = | ||
* The setting <code>export OMPI_MCA_pml=ucx</code> is necessary to prevent a "failed OFI Libfabric library call". | * The setting <code>export OMPI_MCA_pml=ucx</code> is necessary to prevent a "failed OFI Libfabric library call". | ||
Aktuelle Version vom 17. Dezember 2024, 13:34 Uhr
New Opterox-Login
Server is zeon.physik.uni-due.de, home directories are the same.
Queueing system = Slurm
sinfoshows overall load and available queues (partitions). The default one is marked with*.squeueshows running jobs.- simplest submission:
sbatch -nn script-name scanceljob-id kills job.
Intel oneAPI
Intel compilers, MKL and MPI are installed, must be selected via the module system:
module use /opt/intel/oneapi/modulefiles (unless you include that directory in your MODULEPATH)
module availlists the installed modules, relevant are:- compiler/latest →
icx,icpx,ifx, ... (the new Intel compilers) - icc/latest →
icc,icpc(the deprecated C/C++ compilers) - ifort/latest →
ifort(the deprecated Fortran compiler) - mpi/latest →
mpirun,mpiicx,mpiicpx,mpiifx,mpiicc,mpiicpc,mpiifort, ... (Attention: Thempii*s are only wrappers; the actual compiler module needs to be loaded, too.) - mkl/latest
- compiler/latest →
module load... loads a module.
Inside a shell script (bash), you have to do shopt -s expand_aliases in order to be able to use the module command.
Pitfalls
- The
modulesystem fails to reach some Intel libraries (like libcilkrts.so.5*). If needed, their path has to be found out and appended:export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/intel/oneapi/... ifort/mpiifort: When compiling with-i8, you also have to link with-i8(cf. also manual).
*: currently in /opt/intel/oneapi/compiler/2023.2.4/linux/bin/intel64
OpenMPI
- The setting
export OMPI_MCA_pml=ucxis necessary to prevent a "failed OFI Libfabric library call".